Synthetic Example Multiomics Benchmarking Dataset

A unified single-cell multiomics dataset pairing scRNA-seq and scATAC-seq profiles across the same 80 cells, accompanied by cell-type labels, batch annotations, and logged computational scalability metrics.

Usage

data(example_multiomics)

Format

A list with 5 elements:

ref_multi

Named list of reference matrices: rna (60 x 80) and atac (60 x 80).

sim_multi

Named list of simulated matrices: rna (60 x 80) and atac (60 x 80).

cell_types

A factor of cell-type identities ("TypeA", "TypeB") for the 80 cells.

batch_info

A factor of batch annotations ("Batch1", "Batch2") for the 80 cells.

resource_stats

A list of computational scalability metrics: cpu_time, memory_mb, system_time, elapsed_time.

Source

Synthetic multiomics benchmark data generated for testing scSimEval.

Examples

data(example_multiomics)
names(example_multiomics$ref_multi)
#> [1] "rna"  "atac"
names(example_multiomics$sim_multi)
#> [1] "rna"  "atac"